Installation

The straightforward way to install

The most straightforward way to install fluff is with conda using the bioconda channel (Python 2.7 only):

$ conda config --add channels r
$ conda config --add channels defaults
$ conda config --add channels conda-forge
$ conda config --add channels bioconda

$ conda install biofluff

Or, in a seperate environment:

$ conda create -n fluff python=2 biofluff
# Before using fluff activate the environment:
$ source activate fluff

Alternative: using pip

You can use pip to install fluff, either as root user or in a virtal environment (Python 2.7 only).

$ pip install biofluff

Prerequisites for installation on Mac OS X

For installation on Mac OS X you might need some additional items:

Installation from source

You can check out the development version of fluff using git:

# option 1
$ git clone https://github.com/simonvh/fluff.git
$ cd fluff

Alternatively, you can download the lastest version of fluff at:

https://github.com/simonvh/fluff/releases

In this case, start by unpacking the source archive

# option 2
$ tar xvzf fluff-<version>.tar.gz
$ cd fluff-<version>

Now you can build fluff with the following command:

python setup.py build

If you encounter no errors, go ahead with installing fluff:

  • root privileges required
sudo python setup.py install
  • install in user site-package
sudo python setup.py install --user